contextual-allele-relationship-type

  1. Allele Model
  2. Allele implementation
  3. Value Set List
  4. contextual-allele-relationship-type

The classification of relationships between two contextual alleles.

This value set uses codes provided by the Relationship Ontology (RO) which are further defined by the ClinGen Data Modeling WG (Allele Domain). Definitions use by RO are still valid in relation to our model.

Summary

Code System URL: http://clingen.org/model/allele/contextual-allele-relationship-type
Value Set URL: http://clingen.org/model/allele/vs/contextual-allele-relationship-type
Definition: Type Relationships used for ContextualAllele.

Formal value Set definition: XML or JSON.

The value set contains 3 concepts

ContextualAlleleRelationshipType

Relational classification to catalog two contextual alleles (e.g. nucleotide allele, NM_007294.3(BRCA1):c.5297T>G "has the protein effect" NP_009225.1(BRCA1):p.Ile1766Ser).

Code Display Definition
RO:0003001 produced_by Describes the relationship between an AminoAcidContextualAllele and a NucleotideContextualAllele.
RO:0003000 produces Describes the relationship between a NucleotideContextualAllele and an AminoAcidContextualAllele.
RO:0002514 sequentially_related_to Describes the relationship between two representations of a ContextualAllele.
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