Value Sets Defined in ClinGen
This table contains a list of all the value sets defined as part of the ClinGen data model. Some of these value sets include codes defined elsewhere, some define their own codes (implicit code system), and some do both. Any implicit code systems are case sensitive, though FHIR will never define codes that only differ by case.
Namespace: http://clingen.org/dm/vs
| Name | Definition | Source | Id | Usage |
|---|---|---|---|---|
| ancillary-amino-acid-change-type | This value set includes only the types associated with amino acid allele instances. | Sequence Ontology | 25 | core |
| ancillary-nucleotide-change-type | This value set includes only the types associated with nucleotide allele instances. | Sequence Ontology | 23 | core |
| ancillary-transcript-region-type | This value set includes only the transcript associated regions that is associated with a transcript allele instance reference coordinate. | Sequence Ontology | 21 | core |
| canonical-allele-complexity | Codes providing the multiplicity of simple to canonical allele relationships. | Internal | 8 | core |
| canonical-allele-replacement-type | TBD | Internal | 7 | core |
| canonical-allele-type | Codes providing the type of CanonicalAllele | Internal | 1 | core |
| contextual-allele-name-type | Codes informing the type of ContextualAllele used. | Internal | 4 | core |
| contextual-allele-relationship-type | The classification of relationships between two contextual alleles. | RO/Internal | 3 | core |
| contextual-allele-type | Codes providing the type of ContextualAllele | Internal | 2 | core |
| primary-amino-acid-change-type | This value set includes only the types associated with amino acid allele instances. | Sequence Ontology | 24 | core |
| primary-nucleotide-change-type | This value set includes only the types associated with nucleotide allele instances. | Sequence Ontology | 22 | core |
| primary-transcript-region-type | This value set includes only the transcript associated regions that is associated with a transcript allele instance reference coordinate. | Sequence Ontology | 20 | core |
| reference-sequence-chromosome | Reference sequence notation | NCBI | 9 | core |
| reference-sequence-relationship-type | The relationship classification between an amino acid and transcript references. | Internal/RO | 6 | core |
| reference-sequence-type | Codes providing the type of a reference sequence | Sequence Ontology | 5 | core |