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Class: Gene

A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions.

URI: SO:0000704

Slots

Name Range Cardinality Description Info
symbol string 0..1 None .
synonym string 0..1 None .
xref string 0..1 None .

Usages

used by used in type used
GeneticCondition has_gene range gene
Variant has_gene range gene

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • HGNC

  • NCBIGene

LinkML Specification

Direct

name: gene
id_prefixes:
- HGNC
- NCBIGene
description: A region (or regions) that includes all of the sequence elements necessary
  to encode a functional transcript. A gene may include regulatory regions, transcribed
  regions and/or other functional sequence regions.
from_schema: https://dataexchange.clinicalgenome.org/variant-functional-assay
attributes:
  symbol:
    name: symbol
    from_schema: https://dataexchange.clinicalgenome.org/variant-functional-assay
  synonym:
    name: synonym
    from_schema: https://dataexchange.clinicalgenome.org/variant-functional-assay
  xref:
    name: xref
    from_schema: https://dataexchange.clinicalgenome.org/variant-functional-assay
class_uri: SO:0000704

Induced

name: gene
id_prefixes:
- HGNC
- NCBIGene
description: A region (or regions) that includes all of the sequence elements necessary
  to encode a functional transcript. A gene may include regulatory regions, transcribed
  regions and/or other functional sequence regions.
from_schema: https://dataexchange.clinicalgenome.org/variant-functional-assay
attributes:
  symbol:
    name: symbol
    from_schema: https://dataexchange.clinicalgenome.org/variant-functional-assay
    alias: symbol
    owner: gene
    range: string
  synonym:
    name: synonym
    from_schema: https://dataexchange.clinicalgenome.org/variant-functional-assay
    alias: synonym
    owner: gene
    range: string
  xref:
    name: xref
    from_schema: https://dataexchange.clinicalgenome.org/variant-functional-assay
    alias: xref
    owner: gene
    range: string
class_uri: SO:0000704