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GenomicContextualAllele

  1. Allele Model
  2. Conceptual
  3. ContextualAllele
  4. GenomicContextualAllele

A ConceptualAllele that uses a GenomicReferenceCoordinate as its ReferenceCoordinate.

Scope and Usage

see also: ContextualAllele

GenomicContextualAllele represents an allele at a location on a GenomicReferenceCoordinate. For each different GenomicReferenceSequence, a new GenomicContextualAllele would be created, and these would be aggregated at the SimpleCanonicalAllele level, along with any TranscriptContextualAlleles.

Attributes

None beyond those of NucleotideContextualAllele

Exclusions and Limitations

  • Allele Overview
  • Discussion
  • Implementation
  • Resource
  • Conceptual
    • CanonicalAllele
    • ContextualAllele
      • AminoAcidContextualAllele
      • AminoAcidReferenceCoordinate
      • ContextualAlleleName
      • ExternalPosition
      • GenomicContextualAllele
      • GenomicReferenceCoordinate
      • InternalPosition
      • NucleotideContextualAllele
      • NucleotideReferenceCoordinate
      • Position
      • ReferenceCoordinate
      • TranscriptContextualAllele
      • TranscriptReferenceCoordinate
    • Gene
    • Provenance
    • ReferenceSequence

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