Scope and Usage
See TranscriptReferenceCoordinate for details on the Scope and Usage of ExternalPosition.
Exclusions and Limitations
The relationship between the transcript and the genomic sequence to which it is mapped is partially modeled, the details of the mapping are not modeled.
Attributes
| Attribute Name | Attribute Type | Cardinality |
|---|---|---|
| offsetLength | int | 1 |
| offsetDirection | Code | 1 |
| genomicIndex | int | 1 |
offsetLength: intronic offset of the Position. Used in coordination with the index attribute of the Position. This is the distance into the intron from the location of the index in the TranscriptReferenceSequence.
offsetDirection: Declares whether the intron is to the 5-prime or 3-prime direction of the Position index.
genomicIndex: the index of this position in the given GenomicReferenceSequence.
Related Entities
| Relationship Name | Entity Type | Cardinality |
|---|---|---|
| genomicReferenceSequence | GenomicReferenceSequence | 1 |
genomicReferenceSequence: A GenomicReferenceSequence to which this transcript has been mapped.