This is a value set defined by the ClinGen Data Modeling WG (Allele Domain)
Summary
| Code System URL: | http://clingen.org/model/allele/contextual-allele-type |
| Value Set URL: | http://clingen.org/model/allele/vs/contextual-allele-type |
| Definition: | Codes providing the type of a contextual allele |
Formal value Set definition : XML or JSON.
This value set defines its own codes:
This value set contains 2 concepts
ContextualAlleleType
Codes providing the type of a contextual allele
This value set defines its own terms in the system http://clingen.org/model/allele/contextual-allele-type
| Code | Display | Definition |
|---|---|---|
| SO:0000991 | genomic |
The type of the contextual allele is nucleotide. All associated contextual alleles are genomic or transcript based. |
| SO:0000673 | transcript |
An RNA synthesized on a DNA or RNA template by an RNA polymerase. |
| SO:0001237 | amino_acid |
A sequence feature that corresponds to a single amino acid residue in a polypeptide. |