contextual-allele-type

Codes providing the type of ContextualAllele

This is a value set defined by the ClinGen Data Modeling WG (Allele Domain)

Summary

Code System URL: http://clingen.org/model/allele/contextual-allele-type
Value Set URL: http://clingen.org/model/allele/vs/contextual-allele-type
Definition: Codes providing the type of a contextual allele


Formal value Set definition : XML or JSON.

This value set defines its own codes:

This value set contains 2 concepts

ContextualAlleleType

Codes providing the type of a contextual allele

This value set defines its own terms in the system http://clingen.org/model/allele/contextual-allele-type

Code Display Definition
SO:0000991 genomic The type of the contextual allele is nucleotide. All associated contextual alleles are genomic or transcript based.
SO:0000673 transcript An RNA synthesized on a DNA or RNA template by an RNA polymerase.
SO:0001237 amino_acid A sequence feature that corresponds to a single amino acid residue in a polypeptide.