Scope and Usage
This value set can be used in conjunction with the ancillary-transcript-region-type, which provides additional detail to the primaryTranscriptRegionType.
primaryTranscriptRegionType:
Annotations done using the primaryTranscriptRegionType attribute are restricted to one of the following terms provided. Any term used outside this list would be considered invalid for this attribute.
| Code | Display Name |
|---|---|
| SO:0000316 | CDS |
| SO:0000191 | interior_intron |
| SO:0000507 | pseudogenic_exon |
| SO:0000162 | splice_site |
| SO:0000204 | five_prime_UTR |
| SO:0000205 | three_prime_UTR |
This value set is used in the following places:
- ContextualAllele.ReferenceCoordinate.primaryTranscriptRegionType (Resource)
- TranscriptReferenceCoordinate.primaryTranscriptRegionType (Conceptual)
Examples:
primaryTranscriptRegionType: (cardinality of 1..*)
| Type | Display Name | Code |
|---|---|---|
primaryTranscriptRegionType |
CDS |
SO:0000316 |
| Type | Display Name | Code |
|---|---|---|
primaryTranscriptRegionType |
splice_site |
SO:0000162 |
| Type | Display Name | Code |
|---|---|---|
primaryTranscriptRegionType |
CDS |
SO:0000316 |
primaryTranscriptRegionType |
interior_intron |
SO:0000191 |
primaryTranscriptRegionType |
splice_site |
SO:0000162 |