This value set uses codes provided by the Sequence Ontology (SO).
Summary
| Code System URL: | http://clingen.org/model/allele/reference-sequence-type |
| Value Set URL: | http://clingen.org/model/allele/vs/reference-sequence-type |
| Definition: | Codes providing the type of a reference sequence |
Formal value Set definition : XML or JSON.
This value set defines its own codes:
This value set contains 2 concepts
ReferenceSequenceType
Codes providing the type of a reference sequence
This value set defines its own terms in the system http://clingen.org/model/allele/reference-sequence-type
| Code | Display | Definition |
|---|---|---|
| SO:0000673 | transcript |
An RNA synthesized on a DNA or RNA template by an RNA polymerase. |
| SO:0000704 | gene |
A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. |
| SO:0000340 | chromosome |
Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication. |
| SO:0001237 | amino_acid |
A sequence feature that corresponds to a single amino acid residue in a polypeptide. |
This value set is used in the following places: