SequenceLocation

An attribute of a sequence feature related to the location of its starting and ending residues according to some reference coordinate system.

GENO:0000815
Descended from DomainEntity

Scope and Usage

TODO MB: add comment clarifying 'sequence feature' used in SO sense, and explain this

Attributes

Name Type Cardinality Description IRI Defined in
referenceSequence @id 0..1 Sequence on which the region is defined FALDO:reference SequenceLocation
start integer 0..1 Start of the region in 0-based coordinates GENO:0000894 SequenceLocation
stop integer 0..1 End of the region in 0-based coordinates GENO:0000895 SequenceLocation
label string 0..1 A name given to the resource. RDFS:label Entity
description string 0..1 Description may include but is not limited to: an abstract, a table of contents, a graphical representation, or a free-text account of the resource. DC:description Entity

Instances

ID label description referenceSequence start stop

CGEX:Loc432

REFSEQ:NP_005219.2

(NP_005219.2)

704

1016

CGEX:Loc433

REFSEQ:NM_004333.4

(NM_004333.4)

1803

1921

CGEX:Loc434

REFSEQ:NM_000169.2

(NM_000169.2)

996

1012

CGEX:Loc435

REFSEQ:NP_001360.1

(NP_001360.1)

2490

2496

CGEX:Loc436

REFSEQ:NP_056375.2

(NP_056375.2)

35

43

CGEX:Loc437

REFSEQ:NP_003915.2

(NP_003915.2)

241

260

CGEX:Loc438

REFSEQ:NM_001271208.1

(NM_001271208.1)

154

183

CGEX:Loc439

REFSEQ:NM_133378.4

(NM_133378.4)

6509

39262

CGEX:Loc440

REFSEQ:NM_147196.2

(NM_147196.2)

522

548